FT
MPKB-BRI	0 : 1	Pulau Pinang
	0 : 1	Nigel Dabingyaba (40')
Stadium Sultan Muhammad IV, Kota Bharu

	AET
PKNP	1 : 1	Kelantan
G. Mugenthiran (10')	1 : 0
	1 : 1	Indra Putra (64')
Stadium Perak, Ipoh

* PKNP menang penalti 4-3

	FT
Melaka United	1 : 0	PKNS
Amri Yahyah (65')	1 : 0
Stadium Hang Jebat, Melaka

	FT
Felda United	0 : 2	Johor Darul Ta'zim
	0 : 1	Gabriel Guerra (13')
	0 : 2	Gonzalo Cabrera (80')
Stadium Tun Abdul Razak, Jengka

	AET
Johor Darul Ta'zim II	2 : 4	Pahang
Hadi Fayyad (35')	1 : 0
Hadi Fayyad (38')	2 : 0
	2 : 1	Mohamadou Sumareh (46')
	2 : 2	Mohamadou Sumareh (67')
	2 : 3	Matheus Alves (104')
	2 : 4	Salomon Raj (109')
Stadium Majlis Perbandaran Pasir Gudang

	FT
Kedah	4 : 2	Kuala Lumpur
Liridon Krasniqi (32')	1 : 0
Farhan Roslan (35')	2 : 0
Farhan Roslan (42')	3 : 0
Farhan Roslan (62')	4 : 0
	4 : 1	Zac Anderson (75' gs)
	4 : 2	Ibrahim Syaihul (90')
Stadium Darul Aman, Alor Setar

	FT
PJ Rangers	1 : 2	UiTM
	0 : 1	Afif Asyraf (48')
Faizwan Abdullah (70')	1 : 1
	1 : 2	Do Dong-hyun (87')
Stadium Majlis Bandaraya Petaling Jaya

	FT
Perlis	1 : 0	PDRM
Brandon Adams (90')	1 : 0
Stadium Tuanku Syed Putra, Kangar

	AET
Selangor	0 : 0	Negeri Sembilan
Stadium Majlis Perbandaran Selayang

* Negeri Sembilan menang penalti 4-3

	FT
Sarawak	6 : 3	MISC-MIFA
Mark Hartmann (11')	1 : 0
Mateo Roskam (24')	2 : 0
Ronny Harun (33')	3 : 0
Mateo Roskam (36')	4 : 0
	4 : 1	Ooi Shee Keong (56')
Mark Hartmann (60')	5 : 1
	5 : 2	Michael Chukwubunna (70' pen)
	5 : 3	Michael Chukwubunna (77' pen)
Mark Hartmann (80')	6 : 3
Stadium Negeri, Kuching

	FT
Sabah	1 : 0	UKM
Igor Cerina (13')	1 : 0
Stadium Likas, Kota Kinabalu

	AET
T-Team	1 : 1	ATM
	0 : 1	Pavel Smolyachenko (5' pen)
Farhod Tadjiev (50' pen)	1 : 1
Stadium Sultan Ismail Nasiruddin Shah, Kuala Terengganu

* T-Team menang penalti 4-2

Pulau Pinang, PKNP, Melaka United, Johor Darul Ta'zim, Pahang, Kedah, UiTM, Perlis, Negeri Sembilan, Sarawak, Sabah, T-Team mara ke Pusingan Ketiga Piala FA 2017