Berikut ialah senarai jendela perpindahan kedua untuk musim 2016:

Liga Super

Pasukan	Masuk	Keluar
Felda United	Fakri Saarani	Ezrie Sazali Ferris Danial Nasir Zul Fahmi Awang
Johor Darul Ta’zim	Dominic Tan Hasbullah Abu Bakar Azrif Nasrulhaq	Amer Saidin Akram Mahinan
Kedah	Shane Smeltz Thiago Fernandes	Carlos Kahê Sandro da Silva Fakri Saarani
Kelantan	Morgaro Gomis Wander Luiz	Rozaimi Mat Noor Farisham Ismail Faim Zainal Abidin Dramane Traoré Jonatan Lucca
Pahang	Claudio Meneses Pablo Vranjican Jailton Santos Faysal Shayesteh R. Dinesh M. Kogileswaran Helmi Eliza Elias	Zeshan Rehman Dalibor Volaš Germán Pacheco Nejc Potokar
PDRM	Fakrul Aiman Sidid Guilherme de Paula Safiee Ahmad Fauzi Majid Eskandar Ismail	Ali Ashfaq Izuan Salahuddin Fekry Tajudin Safwan Hashim
Perak	Xhevahir Sukaj Syahmil Khairi Razali Kandasamy Oybek Kilichev Irfan Ghani Tuah Iskandar	Vokhid Shodiev Eric Lewis
Pulau Pinang	Jeong Seok-min Ranti Martins Farisham Ismail	Brent Griffiths Osas Saha
Sarawak	Teah Baysah Dennis	Davide Grassi
Selangor	Ugochukwu Ukah	Robert Cornthwaite Azrif Nasrulhaq
T-Team	Tiada	Radhi Yusof
Terengganu	Radhi Yusof Bogdan Milić Hasrolsyawal Hamid Suhaimi Husin	Amirizdwan Taj Gustavo López Juan Morales

Liga Premier

Pasukan	Masuk	Keluar
ATM	Khassan Abdukarimov Sirojiddin Rakhmatullaev Boris Fomenkov Faqih Ikhwan Fauzi Noraiman Talib Aiman Nasir Suhairy Johari Giyos Irisbekov	Zamri Yusuf Syafez Mohammad Faizul Saad
DRB-HICOM	Cedric Mbaga Ibrahim Aziz Izuan Salahuddin Safwan Hashim Shamar Fadzil Iszwan Ismail	Philip Lund Fakrul Sidid R. Sanjef Dinesh
Johor Darul Ta’zim II	Rafael Bonfim Darren Lok Azrul Haziq Aminuddin Syafiq Heelmi Fikri Amer Saidin Akram Mahinan	Dominic Tan Hasbullah Abu Bakar Tuah Iskandar Irfan Ghani Shazalee Ramlee Curran Ferns Stuart Wark
Kuala Lumpur	Jonathan Zorrilla Diego Mellao Ibrahim Syaihul Nazri Ahmad	Anselmo da Silva Mario Karlović Azidan Sarudin
Kuantan	Shazalee Ramlee Sim Woonsub	Rohaizad Zainal Abidin Shunsuke Nakatake
Melaka United	Reeshafiq Alwi Yaser Islame Alexandru Tudose Ezrie Sazali Ferris Danial Fadzley Abdul Rahim Khuzaimi Piee Saiful Mustafa	Faiz Suhaimi Rusmanizam Roseland Shin Jaepil Shahir Ismail Balša Božović Marco Stefan Petrovski V. Kavichelvan Syazwan Nordin
Negeri Sembilan	Henrique Silva Goran Jerković Curran Ferns Benjamin King	Kevin Gunter Andrew Nabbout Joel Joseph Chianese
Perlis	Damion Stewart Park Yongjun Charles Chad	Obinna Nwaneri Kayne Vincent Fauzi Majid Edward Wilson
PKNS	Tiada	Muhaimin Mohamad K. Satish
Sabah	Robson Rendy Rining Everton Santos Stuart Wark Muamer Salibašić	Fadzley Rahim Marco Silva Nazri Ahmad Prince Nnake
Sime Darby	Zul Fahmi Awang Charles Obi Ikechukwu	Lee Gilhoon
UiTM	Syafiq Syazwan Min Syafiq Ramli Franklin Touadéré Oh Juho Yosri Derma Raju John Matkin Kevin Gunter Moustapha Belibi	G. Rohan Kang Jin Ouk Pavel Purishkin Eliel Guardiano Hasrul Hasim Shammin Abdullah Wafiq Wajdy Hakeem Badri Fuad Pavel Matiash

sumber: footballmalaysia.com